GAUGE-Annotated Microbial Transcriptomic Data Facilitate Parallel Mining and High-Throughput Reanalysis To Form Data-Driven Hypotheses
ABSTRACT The NCBI Gene Expression Omnibus (GEO) provides tools to query and download transcriptomic data.However, less than 4% of microbial experiments include the sample group annotations required to assess differential gene expression for high-throughput reanalysis, and data deposited after 2014 universally lack these annotations.Our algorithm GA